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List of Recent Publications

  • Elleder, D., Plachý, J., Hejnar, J., Geryk, J., Svoboda, J. : Close linkage of genes encoding receptors for subgroup A and C of avian sarcoma-leukosis virus on chicken chromosome 28. Anim. Genet. 35: 176-181, 2004.
    Publication in PDF format ( 96 kB )

  • Brühl, H., Čihák, J., Schneider, M.A., Plachý, J., Rupp, T., Wenzel, I., Shakaremi, M., Milz, S., Ellwart, J.W., Stangassinger, M., Schlöndorff, D., Mack, M. : Dual role of CCR2 during initiation and progression of collagen induced arthritis - evidence for regulatory activity of CCR2+ T cells. J. Immunol. 172: 890-898, 2004.

  • Plachý, J., Kaiser, P., Hála, K. : Genetics of the immune system. In: Poultry Genetics, Breeding and Biotechnology, pp. 293-309. Ed. by W.M. Muir a S.E. Aggrey. CABI Publishing, Walligford a Cambridge, 2003 ISBN 0 85199 660 4.

  • Pion, M., Jordan, A., Biancotto, A., Dequiedt, F., Gondois-Rey, F., Rondeau, S., Vigne, R., Hejnar, J., Verdin, E., Hirsch, I. : Transcriptional suppression of in vitro integrated HIV-1 does not correlate with proviral DNA methylation. J. Virol. 77: 4025-4032, 2003.
    Publication in PDF format ( 904 kB )

  • Hejnar, J., Elleder, D., Hájková, P., Walter, J., Blažková, J., Svoboda, J. : Demethylation of host cell DNA at the site of avian retrovirus integration. Biochem. Biophys. Res. Commun. 311: 641-648, 2003.
    Publication in PDF format ( 260 kB )

  • Lercher, M.J., Urrutia, A.O, Pavlíček, A, Hurst, L.D. : A unification of mosaic structures in the human genome. Hum Mol Genet. 12: 2411-2415, 2003.

  • Chrastina, A., Závada, J., Parkkila, S., Kaluz, Š., Kaluzová;, M., Rajčáni, J., Pastorek, J., Pastoreková, S. : Biodistribution and pharmacokinetics of 125I labeled monoclonal antibody M75 specific for an intrinsic marker of hypoxia carbonic anhydrase IX in nude mice xenografted with human colorectal carcinoma. Int. J. Cancer, 105: 873- 881, 2003.

  • Závada, J., Závadová, Z., Zaťovičová;, M., Hyršl, L., Kawaciuk, I. : Soluble form of carbonic anhydrase IX (CA IX) in the serum and urine of renal carcinoma patients. Br. J. Cancer. 89:1067-1071, 2003.

  • Trejbalová, K., Plachý, J., Dezélée, P., Geryk, J., Hejnar, J., Calothy, G., Svoboda, J. : The 3' untranslated region of the chicken c-src protooncogene modulates gene expression. Folia Biol. (Praha) 49: 51-62, 2003.
    Publication in PDF format ( 796 kB )

  • Svoboda, J., Geryk, J., Elleder, D. : Heterogenous pathogenicity of retroviruses: lessons from birds, primates, and rodents. Review. Adv. Cancer Res. 87: 59- 126, 2003.

  • Svoboda, J. : Postulation of and evidence for provirus existence in RSV-transformed cells and for an oncogenic activity associated with only part of the RSV genome. Gene 317: 209-213, 2003.

  • Stepanets, V., Vernerová, Z., Vilhelmová, M., Geryk, J., Plachý, J., Hejnar, J., Weichold, F.F., Svoboda, J. : Intraembryonic avian leukosis virus subgroup C (ALV-C) inoculation producing wasting disease inducks soon after hatching. Folia Biol. (Praha). 49: 100-109, 2003.

  • Hofmann, A., Plachý, J., Hunt, L., Kaufman, J., Hála, K. : v-src oncogene-specific carboxy-terminal peptide is immunoprotective against Rous sarcoma growth in chickens with MHC class I allele B-F12. Vaccine 21: 4694-4699, 2003.
    Publication in PDF format ( 132 kB )

  • Pavlíček, A., Pačes, J., Elleder, D., Hejnar, J. : Processed pseudogenes of human endogenous retroviruses generated by LINE1: their integration, stability, and distribution. Genome Res. 12: 391-399, 2002.
    Publication in PDF format ( 416 kB )

  • Pavlíček, A., Pačes, J., Zíka, R., Hejnar, J. : Length distribution of long interspersed nuclear elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection. Gene 300: 189-194, 2002.
    Publication in PDF format ( 196 kB )

  • Pačes, J., Pavlíček, A., Pačes, V. : HERVd: database of human endogenous retroviruses. Nucleic Acids Res. 30: 205-206, 2002.
    Publicatin in PDF format ( 64 kB )

  • Elleder, D., Pavlíček, A., Pačes, J., Hejnar. J. : Preferential integration of human immunodeficiency virus type 1 into genes, cytogenetic R bands and GC-rich regions: insight from the human genome sequence. FEBS Lett. 517: 285-286, 2002.
    Publication in PDF format ( 72 kB )

  • Pavlíček, A., Clay, O., Jabbari, K., Pačes, J., Bernardi, G. : Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17. FEBS Lett. 511:175-177, 2002.

  • Pavlíček, A., Pačes, J., Clay, O., Bernardi, G. : A compact view of isochores in the draft human genome sequence. FEBS Lett. 511: 165-169, 2002.

  • Pavlíček, A., Clay, O., Bernardi, G. : Transposable elements encoding functional proteins: pitfalls in unprocessed genomic data ? FEBS Lett. 523: 252-253, 2002.

  • Buerstedde, J.-M., Arakawa, H., Watahiki, A., Carninci, P.P., Hayashizaki, Y.Y., Korn, B., Plachý, J. : The DT40 web site: sampling and connecting the genes of a B cell line. Nucleic Acids Res. 30: 230-231, 2002.
    Publication in PDF format ( 60 kB )

  • Plachý, J., Hejnar, J. : Chicken cells - oncogene transformation, immortalization and more. Folia Biologica (Praha) 48: 126-138, 2002.

  • Ortová-Gut, M., Parkkila, S., Rohde, E., Závada, J., Vernerová;, Z., Hocker, M., Pastorek, J., Karttunen, T., Závadová, Z., Knobeloch, K.-P., Wiedenmann, B., Svoboda, J., Horák, I., Pastoreková, S. : Gastric hyperplasia in mice with the targeted disruption of the carbonic anhydrase gene Car9. Gastroenterology 123:1889-1903, 2002.

  • Hejnar, J., Hájková, P., Plachý, J., Elleder, D., Stepanets, V., Svoboda, J. : CpG island protects Rous sarcoma virus-derived vectors integrated into nonpermissive cells from DNA methylation and transcriptional suppression. Proc. Natl. Acad. Sci. USA 98:565-569, 2001.
    Publication in PDF format ( 216 kB )

  • Stepanets, V.,, Vernerová, Z., Vilhelmová, M., Geryk, J., Svoboda, J., : Amyloid A amyloidosis in non-infected and avian leukosis virus-C persistently infected inbred ducks. Avian Pathol. 30: 33-42, 2001.

  • Ivanov, S., Liao, S.-Y., Ivanova, A., Danilkovitch-Miagkova, A., Tarasova, N., Weirich, G., Merrill, M.J., Proescholdt, M.A., Oldfield, E.H., Lee, J., Zavada, J., Waheed, A., Sly, W., Lehrman, M.I., and Stanbridge, E.J. : Expression of hypoxia-inducible all-surface transmembrane carbonic anhydrases in human cancer. Am. J. Pathol 158: 905-919, 2001.

  • Plachý, J. Hejnar, J., Trtková, K., Trejbalová, K., Svoboda, J.,, Hála K. : DNA vaccination against v-src oncogene-induced tumours in congenic chickens. Vaccine 19: 4526-4535, 2001.
    Publication in PDF format ( 560 kB )

  • Mack, M., Cihak, J., Simonis, C., Luckow, B., Proudfoot, A.E.I., Plachý, J., Bruehl, H. Frink, M., Anders, H.-J., Vielhauer, V., Pfirstinger, J., Stangassinger, M., Schloendorff, D., : Expression and characterization of the chemokine receptors CCR2 and CCR5 in mice. J. Immunol. 166: 4697-4704, 2001.

  • Abdrakhmanov, Lodygin, D., Geroth, P., Arakawa, H., Law, A., Plachý, J., Korn, B., Buerstedde, J.M. : A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Genome Res. 10: 2062-2069, 2001.

  • Hampl, V., Pavlíček, A., Flégr, J. : Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasites. Int. J. Syst. Evol. Microbiol 51: 731-735, 2001.

  • Saccone, S., Pavlíček, A.,, Federico, C., Pačes, J., Bernardi, G. : Genes, isochores and bands in human chromosomes 21 and 22. Chromosome Res. 9: 533-539, 2001.

  • Pavlíček, A., Jabbari, K., Pačes, J., Pačes, V., Hejnar, J., Bernardi, G., : Similar integration but different stability of Alus and LINEs in the human genome. Gene 276: 39-45, 2001.
    Publication in PDF format ( 332 kB )

  • Svoboda, J., Hejnar, J., Geryk, J., Elleder, D., Vernerová, Z. : Retrovirus in foreign species and the problem of provirus silencing. Gene 261: 181-188, 2000.
    Publication in PDF format ( 576 kB )

  • Svoboda, J. : Cancer: is there involved a bunch of culprits, one culprit, or something in between ? Folia Biol. (Praha) 46: 219-225, 2000.

  • Mack, M., Kleinschmidt, A., Brühl, H., Klier, C., Nelson, P.J., Čihák, J., Plachý, J., Stangassinger, M., Erfle, V., Schlöndorff, D. : Transfer of the chemokine receptor CCR5 between cells by membrane-derived microparticles: a mechanism for cellular human immunodeficiency virus 1 infection. Nat. Med. 6: 769-775, 2000.

  • Plachý, J. : The chicken - a laboratory animal of the class Aves. Folia Biol. (Praha) 46: 17-24, 2000.

  • Hála, K., Kúbek, A., Plachý, J., Vašíček, D. : Expression of nonspecific esterase (NSE) by thyroid follicular epithelium as a marker for the target organ susceptibility to immune system attack. Immunobiology 201: 598-610, 2000.

  • Závada, J., Závadová, Z., Pastorek, J., Biesová, Z., Ježek, J., Velek, J. : Human tumour-associated cell adhesion protein MN/CA IX: identification of M75 epitope and of the region mediating cell adhesion. Br. J. Cancer 82: 1808-1813, 2000.

  • Jurajda, V., Kubíková, L., Halouzka, R., Geryk, J., Svoboda, J. : Avian leukosis virus type J (ALV-J) in the Czech Republic. Acta Vet. Brno 69: 143-145, 2000.