Švecová, H., Kleinová V., Seifert D., Chaloupková H., Baurle J., Kranda,K., Král, V.,Fišer M. Radioiodination of mouse anti-III beta-tubulin antibodies and their evaluation with respect to their use as diagnostic agents for peripheral neuropathies. Appl Radiat Isot (2008). 66(3):310-6.

Kožíšek M., Šašková K., Řezáčová P., Brynda J., van Maarseveen N.M., De Jong D., Boucher Ch., Kagan R., Nijhuis M., Konvalinka J.:Ninety Nine is Not Enough: Molecular Characterisation of Drug-Resistant HIV-Protease Mutants with Insertions in the Flap Region Yielding Resistance to Protease Inhibitors. J. Virol (2007), in press

Bartoňová V., Král V., Sieglová I., Brynda J., Fábry M., Hořejší M., Kožíšek M., Grantz Šašková K., Konvalinka J., Sedláček J., Řezáčová P.:  Potent inhibition of drug-resistant HIV protease variants by monoclonal antibodies. Antiviral Research (2007) 78: 275-277

Král V, Mader P, Collard R., Fábry M., Hořejší M., Řezáčová, P., Kožíšek M., Závada J., Sedláček J., Rulíšek L., Brynda J.: Stabilization of antibody structure upon association to a human carbonic anhydrase IX epitope studied by X-ray crystallography, microcalorimetry, and molecular dynamics simulations. Proteins (2007), 71: 1275-1287

Řezáčová P, Borek D, Moy, S, Joachimiak A, Otwinowski Z: Structure and function of small Toprim domain protein from Bacillus stearothermophyllus. Proteins (2008), 70:311-319

Kožíšek M, Bray J., Řezáčová, P., Šašková K., Brynda J., Pokorná J. Mammano F., Rulíšek L. Konvalinka J.: Molecular analysis of the HIV-1 resistance development: enzymatic activities, crystal structures and thermodynamics of nelfinavir-resistant HIV protease mutants. JMB (2007) 374:1005-16.

Řezáčová P, Krejčiříková V, Borek D, Moy, S., Joachimiak A, Otwinowski Z: Structure of the trehalose repressor TreR from Bacillus subtilis revealed important oligomeric assembly. Proteins (2007) 69:679-82.

Carey, J., Brynda, J., Wolfova, J., Grandori, R., Gustavsson, T., Ettrich, R., Smatanova, I.K.: WrbA bridges bacterial flavodoxins and eukaryotic NAD(P)H:quinone oxidoreductases. Protein Sci. 16, 2301-5 (2007). 

Wolfova, J., Mesters, J.R., Brynda, J., Grandori, R., Natalello, A., Carey, J., Kuta Smatanova, I.: Crystallization and preliminary diffraction analysis of Escherichia coli WrbA in complex with its cofactor flavin mononucleotide. Acta Crystallogr. Sect. F-Struct. Biol. Cryst Commun. 63: 571-575, 2007.

Duskova, J., Dohnalek, J., Skalová, T., Petroková, H., Vondracková, E., Hradilek, M., Konvalinka, J., Soucek, M., Brynda, J., Fabry, M., Sedlacek, J ., Hasek, J.: On the role of the R configuration of the reaction-intermediates isostere in HIV-1 protease-inhibitor binding: X-ray structure at 2.0 A resolution. Acta Crystallogr. D Biol. Crystallogr. 62 (Pt 5): 489-497, 2006.

Markova, V., Smetana, Jr. K., Jenikova, G., Lachova, J., Krejcirikova, V., Poplstein, M., Fabry, M., Brynda, J., Alvarez, R. A., Cummings, R. D., Maly, P.: Role of the carbohydrate recognition domains of mouse galectin-4 and galectin-6 in mouse cells and tissues. Int. J. Mol. Med. 18: 65-76, 2006.
Ondracek, J., Mesters, J.R.: An ensemble of crystallographic models enables the description of novel bromate-oxonian species trapped within a protein crystal. Acta Crystallogr. D Biol. Crystallogr. 69 (Pt 9): 996-1001, 2006.

Kutá Smatanová I, Gavira JA, Řezáčová P, Vácha F, Garcia-Ruiz JM. New techniques for membrane protein crystallization tested on photosystem II core complex of Pisum sativum. Photosynth Res. (2006) 90:255-9.

Cígler P, Kožíšek M, Řezáčová P, Brynda J, Otwinowski Z, Pokorná J, Plešek J, Gruner B, Dolečková-Marešová L, Máša M, Sedláček J, Bodem J, Krausslich HG, Král V, Konvalinka J.: From nonpeptide toward noncarbon protease inhibitors: metallacarboranes as specific and potent inhibitors of HIV protease. PNAS (2005) 102:15394-9.

Ondráček J, Weiss MS, Brynda J, Fiala J, Jursik F, Řezáčová P., Jenner LB, Sedláček J.: Regular arrangement of periodates bound to lysozyme. Acta Cryst (2005) D61:1181-9

Řezáčová P, Brynda J, Lescar J, Fábry M, Hořejší M, Sieglová I, Sedláček J, Bentley GA. Crystal structure of a cross-reaction complex between an anti-HIV-1 protease antibody and an HIV-2 protease peptide. J Struct Biol. (2005) 149:332-7.

Brynda J., Řezáčová P, Fábry M., Hořejší M., Štouračová R., Souček M., Hradílek M., Konvalinka J., Sedláček J.: Inhibitor binding at the protein interface in crystals of a HIV-1 protease complex. Acta Cryst (2004) D60:1943-1948

Brynda J., Řezáčová P, Fábry M., Hořejší M., Štouračová R., Sedláček J., Souček M., Hradílek M., Lepšík M., Konvalinka J.: A Phenylnorstatine Inhibitor Binding to HIV-1 Protease: Geometry, Protonation, and Subsite-Pocket Interactions Analyzed at Atomic Resolution. J. Med. Chem. (2004) 47: 2030-2036

Petrokova, H., Duskova, J., Dohnalek, J., Skalova, T., Vondrackova-Buchtelova, E., Soucek, M., Konvalinka, J., Brynda, J.,Fabry, M., Sedlacek, J., Hasek, J.: Role of hydroxyl group and R/S configuration of isostere in binding properties of HIV-1 protease inhibitors. Eur. J. Biochem. 271: 4451-61, 2004.

Lescar J., Brynda J., Fábry M. Hořejší M., Řezáčová P, Sedláček J., Bentley G. A.: Structure of a single-chain Fv fragment of an antibody that inhibits the HIV-1 and HIV-2 proteases. Acta Cryst. (2003) D59: 955-957 

Řezáčová P, Brynda J., Fábry M., Hořejší M., Štouračová R., Lescar J., Chitarra V., Riottot M-M., Sedláček J., Bentley G. A.: Inhibition of HIV protease by monoclonal antibodies. J. Mol. Recognit. (2002) 15: 272-276

Řezáčová P, Lescar J., Brynda J., Fábry M., Hořejší M., Sedláček J., Bentley G.A.: Structural basis of HIV-1 and HIV-2 protease inhibition by a monoclonal antibody.  Structure (2001) 9: 887-895

Kmoch S., Brynda J., Asfaw B., Bezouška K., Novák P., Řezáčová P, Ondrova L., Filipec M., Sedláček J., Elleder M.: Link between a novel human gammaD-crystallin allele and a unique cataract phenotype explained by protein crystallography. Hum Mol Genet. (2000) 9:1779-86